PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 61aa    MW: 7288.88 Da    PI: 4.3754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15950.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-092357440
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     +T++E++l+++ + + G++ W++Ia +++ gRt+ ++
        PK15950.1 23 MTEQEEDLIYRMFSLVGNR-WDLIAGRVP-GRTAQEI 57
                     7******************.*********.****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.68E-62260No hitNo description
PfamPF002491.7E-82358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-102358IPR009057Homeodomain-like
SuperFamilySSF466893.59E-72458IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
AKHPHNFESD QEVCSLEWEF INMTEQEEDL IYRMFSLVGN RWDLIAGRVP GRTAQEIERF  60
X
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302621.26e-25hypothetical protein POPTR_0002s17030g
SwissprotQ8GV053e-25TRY_ARATH; Transcription factor TRY
TrEMBLB9GQZ86e-25B9GQZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17030.12e-24(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35832757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.12e-26MYB_related family protein